Datasets:

songlab
/

ukb_finemapped_coding

chrom stringclasses 22 values	pos int64 111k 248M	ref stringclasses 4 values	alt stringclasses 4 values	pip float64 0 1	trait stringclasses 121 values	label bool 2 classes	maf float64 0 0.48	ld_score float64 1.91 3.2k	consequence stringclasses 1 value	tss_dist int64 0 1.09M	gene stringlengths 15 15	maf_bin int64 0 96
1	946,538	G	A	0.000856		false	0.071222	19.68	missense_variant	7,262	ENSG00000187634	14
1	979,459	C	T	0		false	0.051668	23.154	missense_variant	2,633	ENSG00000187642	10
1	1,331,358	G	A	0		false	0.074774	23.36	missense_variant	77	ENSG00000169962	14
1	2,505,050	T	G	0		false	0.007183	81.518	missense_variant	21,545	ENSG00000157881	1
1	2,526,571	G	C	0		false	0.028311	23.458	missense_variant	24	ENSG00000157881	5
1	3,632,268	G	C	0		false	0.057835	30.857	missense_variant	7,217	ENSG00000158109	11
1	3,843,196	C	A	0		false	0.048887	18.279	missense_variant	13,997	ENSG00000116198	9
1	6,124,032	A	G	0		false	0.44699	67.428	missense_variant	17,259	ENSG00000116254	89
1	6,245,141	A	C	0		false	0.010006	70.415	missense_variant	961	ENSG00000173673	2
1	6,468,408	C	T	0		false	0.068915	122.27	missense_variant	754	ENSG00000171680	13
1	7,827,519	C	G	0		false	0.097038	79.884	missense_variant	25,545	ENSG00000049247	19
1	9,004,755	G	C	0		false	0.004972	7.2976	missense_variant	21,667	ENSG00000197241	0
1	12,115,601	G	A	1	Eosino	true	0.014946	15.876	missense_variant	10,297	ENSG00000120949	2
1	12,847,604	A	G	0		false	0.008142	8.5125	missense_variant	1,115	ENSG00000179172	1
1	13,475,857	T	C	0		false	0.39726	52.76	missense_variant	38,145	ENSG00000162494	79
1	13,778,796	G	A	0		false	0.023158	57.957	missense_variant	7,069	ENSG00000116731	4
1	13,780,865	T	A	0		false	0.047114	29.645	missense_variant	9,138	ENSG00000116731	9
1	15,507,011	C	T	0		false	0.013175	36.464	missense_variant	40	ENSG00000132906	2
1	15,725,495	G	C	0		false	0.003423	12.666	missense_variant	10,762	ENSG00000162461	0
1	15,738,693	C	T	0		false	0.002914	9.5628	missense_variant	2,434	ENSG00000162461	0
1	15,807,577	C	T	0.001398		false	0.11626	266.31	missense_variant	71	ENSG00000233954	23
1	16,028,095	A	T	0		false	0.2176	174.34	missense_variant	6,058	ENSG00000186510	43
1	16,033,642	C	T	0.00425		false	0.10109	222.45	missense_variant	6,609	ENSG00000184908	20
1	16,405,015	C	G	0		false	0.23402	186.76	missense_variant	1,040	ENSG00000187144	46
1	16,954,740	G	A	0		false	0.05803	122.8	missense_variant	17,948	ENSG00000058453	11
1	17,587,562	G	A	0		false	0.064734	21.262	missense_variant	7,008	ENSG00000074964	12
1	19,113,889	G	C	0		false	0.009617	98.997	missense_variant	4,959	ENSG00000127481	1
1	19,906,558	A	G	0		false	0.019603	52.994	missense_variant	17,058	ENSG00000188784	3
1	19,906,593	G	A	0		false	0.07058	102.3	missense_variant	17,023	ENSG00000188784	14
1	19,920,383	C	T	0		false	0.090999	35.97	missense_variant	3,233	ENSG00000188784	18
1	20,164,025	T	C	0		false	0.40798	37.1	missense_variant	11,168	ENSG00000187980	81
1	21,483,357	T	C	0		false	0.021543	44.158	missense_variant	14,806	ENSG00000142794	4
1	21,563,267	G	A	1	ALP	true	0.01347	32.053	missense_variant	7,035	ENSG00000162551	2
1	21,704,391	T	C	0		false	0.01478	23.893	missense_variant	20,727	ENSG00000090686	2
1	21,823,625	C	T	0		false	0.061703	51.109	missense_variant	9,951	ENSG00000142798	12
1	21,981,045	C	T	0		false	0.00567	72.907	missense_variant	56	ENSG00000219073	1
1	21,984,314	A	G	0		false	0.026209	123.99	missense_variant	3,211	ENSG00000219073	5
1	23,092,310	G	C	0		false	0.014538	30.011	missense_variant	13,296	ENSG00000004487	2
1	24,093,006	A	G	0		false	0.46845	79.271	missense_variant	19,128	ENSG00000142661	93
1	24,342,967	C	T	0		false	0.037001	48.715	missense_variant	19,926	ENSG00000158055	7
1	26,181,925	G	A	0		false	0.001019	11.262	missense_variant	1,756	ENSG00000142675	0
1	26,346,585	G	A	0		false	0.19655	126.26	missense_variant	7,238	ENSG00000176092	39
1	31,692,475	T	C	0		false	0.007405	10.075	missense_variant	4,534	ENSG00000084636	1
1	32,207,307	T	G	0.000682		false	0.063788	210.24	missense_variant	1,635	ENSG00000160051	12
1	32,215,468	C	A	0		false	0.015415	32.459	missense_variant	5,608	ENSG00000084623	3
1	32,600,229	T	C	0		false	0.006588	21.327	missense_variant	50,295	ENSG00000176261	1
1	32,770,188	C	T	0		false	0.032387	37.924	missense_variant	4,520	ENSG00000162522	6
1	32,895,686	G	A	0		false	0.03116	38.383	missense_variant	5,702	ENSG00000121900	6
1	33,605,925	C	T	0		false	0.42275	34.054	missense_variant	33,334	ENSG00000121904	84
1	36,466,446	C	T	0.956791	Mono	true	0.008181	21.579	missense_variant	2,061	ENSG00000116898	1
1	39,387,969	G	T	0		false	0.005041	13.491	missense_variant	21,533	ENSG00000127603	1
1	39,632,656	T	C	0		false	0.00833	14.788	missense_variant	6,986	ENSG00000163909	1
1	39,788,196	C	T	0		false	0.0255	142.08	missense_variant	668	ENSG00000116985	5
1	41,017,304	A	G	0		false	0.016285	90.878	missense_variant	4,412	ENSG00000171790	3
1	42,153,481	C	A	0		false	0.18587	171.6	missense_variant	70	ENSG00000044012	37
1	43,425,140	G	A	0		false	0.007394	24.325	missense_variant	28,311	ENSG00000178922	1
1	44,140,328	G	A	0		false	0.39836	87.389	missense_variant	1,302	ENSG00000283039	79
1	46,035,072	G	C	0.000808		false	0.026035	114.48	missense_variant	97,543	ENSG00000117461	5
1	47,140,798	C	A	0		false	0.008458	34.566	missense_variant	3,342	ENSG00000162365	1
1	50,200,843	C	T	0		false	0.07562	76.816	missense_variant	91,005	ENSG00000162374	15
1	51,765,888	C	T	0		false	0.005164	87.672	missense_variant	18,686	ENSG00000117859	1
1	52,373,320	A	G	0		false	0.0246	108.89	missense_variant	7,114	ENSG00000154222	4
1	53,069,821	C	G	0		false	0.013573	30.313	missense_variant	7,607	ENSG00000174348	2
1	53,078,925	T	C	0		false	0.1198	236.48	missense_variant	16,711	ENSG00000174348	23
1	54,179,186	C	T	0		false	0.098272	35.944	missense_variant	16,249	ENSG00000215883	19
1	54,548,340	C	T	0		false	0.057328	20.665	missense_variant	111	ENSG00000162390	11
1	54,594,689	G	A	0		false	0.022838	49.406	missense_variant	28,835	ENSG00000162391	4
1	54,619,889	C	G	0		false	0.015393	96.407	missense_variant	3,635	ENSG00000162391	3
1	54,654,029	T	C	0		false	0.019099	22.852	missense_variant	12,206	ENSG00000184313	3
1	54,807,907	G	T	0		false	0.3964	154.48	missense_variant	1,843	ENSG00000162398	79
1	54,986,199	G	A	0		false	0.01351	9.0997	missense_variant	5,570	ENSG00000143001	2
1	55,039,974	G	T	1	ApoA,ApoB,CAD,LDLC,TC	true	0.017642	13.095	missense_variant	320	ENSG00000169174	3
1	56,943,786	C	A	0		false	0.007223	6.3864	missense_variant	22,228	ENSG00000021852	1
1	59,833,453	A	G	0		false	0.030891	25.42	missense_variant	18,444	ENSG00000134709	6
1	61,791,364	A	C	0		false	0.11861	25.481	missense_variant	48,883	ENSG00000132849	23
1	62,114,219	G	T	1	ALT,BFP,BMI,BW,Morning_Person	true	0.095976	65.813	missense_variant	128	ENSG00000132849	19
1	63,551,748	G	A	0		false	0.0105	21.778	missense_variant	28,222	ENSG00000203965	2
1	63,555,425	G	A	0		false	0.14346	275.23	missense_variant	31,899	ENSG00000203965	28
1	65,401,836	G	A	0		false	0.02678	49.467	missense_variant	18,750	ENSG00000213625	5
1	66,777,341	C	A	0		false	0.3122	93.159	missense_variant	23,934	ENSG00000172410	62
1	67,052,851	C	T	0.000734		false	0.067644	93.005	missense_variant	1,296	ENSG00000116704	13
1	67,168,129	G	T	0		false	0.46876	133.84	missense_variant	7	ENSG00000162594	93
1	74,109,498	C	T	0		false	0.07264	154.37	missense_variant	34,707	ENSG00000162620	14
1	75,222,416	T	G	0		false	0.012069	36.401	missense_variant	88,027	ENSG00000162624	2
1	78,939,228	T	G	0		false	0.004804	18.432	missense_variant	21,342	ENSG00000162618	0
1	84,401,927	G	A	0.00078		false	0.29848	115.18	missense_variant	3,442	ENSG00000137976	59
1	84,647,546	A	G	0		false	0.36007	143.56	missense_variant	42,742	ENSG00000117155	72
1	85,071,948	C	G	0		false	0.00935	17.072	missense_variant	9,620	ENSG00000162643	1
1	85,124,159	A	G	0		false	0.065778	145.3	missense_variant	2,393	ENSG00000162643	13
1	86,022,549	G	A	0		false	0.26589	234.69	missense_variant	134,222	ENSG00000171502	53
1	86,443,899	G	A	0		false	0.070729	93.105	missense_variant	19,727	ENSG00000137975	14
1	88,983,126	T	C	0		false	0.007625	200.7	missense_variant	9,502	ENSG00000213516	1
1	89,058,073	G	T	0		false	0.027509	115.53	missense_variant	7,134	ENSG00000117228	5
1	89,171,895	G	A	0		false	0.34196	267.59	missense_variant	4,107	ENSG00000213512	68
1	89,713,973	A	G	0.997299	Height	true	0.14267	52.853	missense_variant	80,852	ENSG00000171488	28
1	91,698,089	G	A	0		false	0.013446	21.038	missense_variant	163,503	ENSG00000069702	2
1	92,837,557	A	G	1	Height	true	0.008781	20.926	missense_variant	5,447	ENSG00000122406	1
1	99,875,226	G	T	0		false	0.010554	291.97	missense_variant	22,555	ENSG00000162688	2
1	101,239,021	C	G	1	Lym	true	0.021132	17.847	missense_variant	685	ENSG00000170989	4
1	107,609,935	G	T	0		false	0.003207	4.5763	missense_variant	78,568	ENSG00000134215	0

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UKBB finemapped coding variants

Predictions from all models

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Number of rows:

2,221

Collection including songlab/ukb_finemapped_coding

GPN-Star

Collection

paper: https://www.biorxiv.org/content/10.1101/2025.09.21.677619v1 code: https://github.com/songlab-cal/gpn • 30 items • Updated Dec 7, 2025 • 7