Download grad_cam.py from ErnestBeckham/Breast-Cancer-Classification: direct link, hf CLI and curl.
- Browser
- Download file 3.19 kB
-
https://huggingface.co/spaces/ErnestBeckham/Breast-Cancer-Classification/resolve/main/grad_cam.py
- Command line
-
hf download hf://spaces/ErnestBeckham/Breast-Cancer-Classification/grad_cam.py
-
curl -L -o grad_cam.py https://huggingface.co/spaces/ErnestBeckham/Breast-Cancer-Classification/resolve/main/grad_cam.py
3.19 kB
| import tensorflow as tf | |
| from tensorflow.keras.models import load_model, Model | |
| import cv2 | |
| import matplotlib.pyplot as plt | |
| import numpy as np | |
| import matplotlib.cm as cm | |
| class GradCam: | |
| def __init__(self, model, img, last_conv_layer_name, pred_index=None): | |
| self.model = model | |
| self.img_path = img | |
| self.last_conv_layer_name = last_conv_layer_name | |
| def make_gradcam_heatmap(self, pred_index=None): | |
| # First, we create a model that maps the input image to the activations | |
| # of the last conv layer as well as the output predictions | |
| img_array= self.img_path | |
| grad_model = tf.keras.models.Model( | |
| [self.model.inputs], [self.model.get_layer(self.last_conv_layer_name).output, self.model.output] | |
| ) | |
| # Compute the gradient of the top predicted class for our input image | |
| # with respect to the activations of the last conv layer | |
| with tf.GradientTape() as tape: | |
| last_conv_layer_output, preds = grad_model(img_array) | |
| if pred_index is None: | |
| pred_index = tf.argmax(preds[0]) | |
| class_channel = preds[:, pred_index] | |
| # This is the gradient of the output neuron (top predicted or chosen) | |
| # with regard to the output feature map of the last conv layer | |
| grads = tape.gradient(class_channel, last_conv_layer_output) | |
| # This is a vector where each entry is the mean intensity of the gradient | |
| # over a specific feature map channel | |
| pooled_grads = tf.reduce_mean(grads, axis=(0, 1, 2)) | |
| # We multiply each channel in the feature map array | |
| # by "how important this channel is" with regard to the top predicted class | |
| last_conv_layer_output = last_conv_layer_output[0] | |
| heatmap = last_conv_layer_output @ pooled_grads[..., tf.newaxis] | |
| heatmap = tf.squeeze(heatmap) | |
| # For visualization purpose, we will also normalize the heatmap between 0 & 1 | |
| heatmap = tf.maximum(heatmap, 0) / tf.math.reduce_max(heatmap) | |
| return heatmap.numpy() | |
| def save_and_display_gradcam(self, cam_path="cam.jpg", alpha=0.4): | |
| heatmap = self.make_gradcam_heatmap() | |
| # Load the original image | |
| img = self.img_path | |
| # Rescale the heatmap to a range 0-255 | |
| heatmap = np.uint8(255 * heatmap) | |
| # Use the jet colormap to colorize the heatmap | |
| jet = cm.get_cmap("jet") | |
| jet_colors = jet(np.arange(512))[:, :3] | |
| jet_heatmap = jet_colors[heatmap] | |
| # Create an image with the RGB heatmap | |
| jet_heatmap = tf.keras.preprocessing.image.array_to_img(jet_heatmap) | |
| jet_heatmap = jet_heatmap.resize((img.shape[1], img.shape[0])) | |
| jet_heatmap = tf.keras.preprocessing.image.img_to_array(jet_heatmap) | |
| # Superimpose the heatmap on the original image | |
| superimposed_img = jet_heatmap * alpha + img | |
| superimposed_img = tf.keras.preprocessing.image.array_to_img(superimposed_img) | |
| # Save and display the image | |
| superimposed_img.save(cam_path) | |
| plt.imshow(superimposed_img) | |
| plt.axis('off') | |
| plt.show() | |
| plt.savefig(path) | |